Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PITA_29510.g
View in Genome Browser
Position
scaffold143690:19482-21004 (+)
1522bp
Gene Type
gene
Gene Description (Protein Product)
Cell division control protein 45 homolog
Organism
Pinus taeda
Also AS AT3G25100

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PITA_51462.g Protein ROOT INITIATION DEFECTIVE 3-like
PITA_34926.g Protein ROOT INITIATION DEFECTIVE 3-like
PITA_36374.g Protein ROOT INITIATION DEFECTIVE
Regulatory gene
PITA_00010.g Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
PITA_00047.g homeobox-leucine zipper protein
PITA_00088.g NAC domain-containing protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000075 cell cycle checkpoint signaling BP
GO:0000077 DNA damage checkpoint signaling BP
GO:0000228 nuclear chromosome CC
GO:0000278 mitotic cell cycle BP
GO:0000724 double-strand break repair via homologous recombination BP
GO:0000725 recombinational repair BP
GO:0000727 double-strand break repair via break-induced replication BP
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003678 DNA helicase activity MF
GO:0003682 chromatin binding MF
GO:0003688 DNA replication origin binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003697 single-stranded DNA binding MF
GO:0003824 catalytic activity MF
GO:0004386 helicase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005656 nuclear pre-replicative complex CC
GO:0005657 replication fork CC
GO:0005694 chromosome CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006260 DNA replication BP
GO:0006261 DNA-templated DNA replication BP
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication BP
GO:0006270 DNA replication initiation BP
GO:0006275 regulation of DNA replication BP
GO:0006281 DNA repair BP
GO:0006302 double-strand break repair BP
GO:0006310 DNA recombination BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007093 mitotic cell cycle checkpoint signaling BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008156 negative regulation of DNA replication BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010948 negative regulation of cell cycle process BP
GO:0016043 cellular component organization BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0022402 cell cycle process BP
GO:0022607 cellular component assembly BP
GO:0023052 signaling BP
GO:0031261 DNA replication preinitiation complex CC
GO:0031298 replication fork protection complex CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031570 DNA integrity checkpoint signaling BP
GO:0031573 mitotic intra-S DNA damage checkpoint signaling BP
GO:0031935 obsolete regulation of chromatin silencing BP
GO:0031938 obsolete regulation of chromatin silencing at telomere BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032392 DNA geometric change BP
GO:0032508 DNA duplex unwinding BP
GO:0032991 protein-containing complex CC
GO:0032993 protein-DNA complex CC
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0033260 nuclear DNA replication BP
GO:0033262 regulation of nuclear cell cycle DNA replication BP
GO:0033554 cellular response to stress BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0035556 intracellular signal transduction BP
GO:0036387 pre-replicative complex CC
GO:0036388 pre-replicative complex assembly BP
GO:0042770 signal transduction in response to DNA damage BP
GO:0043138 3'-5' DNA helicase activity MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043565 sequence-specific DNA binding MF
GO:0043596 nuclear replication fork CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044773 mitotic DNA damage checkpoint signaling BP
GO:0044774 mitotic DNA integrity checkpoint signaling BP
GO:0044786 cell cycle DNA replication BP
GO:0045786 negative regulation of cell cycle BP
GO:0045787 positive regulation of cell cycle BP
GO:0045930 negative regulation of mitotic cell cycle BP
GO:0045931 positive regulation of mitotic cell cycle BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051052 regulation of DNA metabolic process BP
GO:0051053 negative regulation of DNA metabolic process BP
GO:0051128 regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060968 obsolete regulation of gene silencing BP
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0071103 DNA conformation change BP
GO:0071163 DNA replication preinitiation complex assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072395 cell cycle checkpoint signaling BP
GO:0072401 DNA integrity checkpoint signaling BP
GO:0072413 mitotic cell cycle checkpoint signaling BP
GO:0072422 DNA damage checkpoint signaling BP
GO:0072428 mitotic intra-S DNA damage checkpoint signaling BP
GO:0080090 regulation of primary metabolic process BP
GO:0090068 positive regulation of cell cycle process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090329 regulation of DNA-templated DNA replication BP
GO:0097159 organic cyclic compound binding MF
GO:0140097 catalytic activity, acting on DNA MF
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901576 organic substance biosynthetic process BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901989 positive regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1901992 positive regulation of mitotic cell cycle phase transition BP
GO:1902275 regulation of chromatin organization BP
GO:1902292 cell cycle DNA replication initiation BP
GO:1902299 pre-replicative complex assembly involved in cell cycle DNA replication BP
GO:1902315 nuclear cell cycle DNA replication initiation BP
GO:1902402 mitotic DNA damage checkpoint signaling BP
GO:1902403 mitotic DNA integrity checkpoint signaling BP
GO:1902576 negative regulation of nuclear cell cycle DNA replication BP
GO:1902806 regulation of cell cycle G1/S phase transition BP
GO:1902808 positive regulation of cell cycle G1/S phase transition BP
GO:1902969 mitotic DNA replication BP
GO:1902975 mitotic DNA replication initiation BP
GO:1902977 mitotic DNA replication preinitiation complex assembly BP
GO:1903047 mitotic cell cycle process BP
GO:1903463 regulation of mitotic cell cycle DNA replication BP
GO:1903464 negative regulation of mitotic cell cycle DNA replication BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:2000045 regulation of G1/S transition of mitotic cell cycle BP
GO:2000104 negative regulation of DNA-templated DNA replication BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP