Basic Information
Gene ID
Position
scaffold19258:131832-153819 (-)
21987bp
Gene Type
gene
Gene Description (Protein Product)
Nup85 Nucleoporin
Organism
Also AS AT5G48600

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PITA_50362.g Nuclear pore complex protein
PITA_41781.g Rae1-like protein
PITA_49159.g Nuclear pore complex protein
Regulatory gene
PITA_00322.g WRKY transcription factor
PITA_01392.g WRKY transcription factor
PITA_01466.g WRKY Transcription Factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.