PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PITA_37799.g View in Genome Browser
Position	scaffold44317:32673-36023 (+) 3350bp
Gene Type	gene
Gene Description (Protein Product)	Photosystem I reaction center subunit IV
Organism	Pinus taeda
Also AS	AT2G20260

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PITA_46256.g NADH dehydrogenase ubiquinone iron-sulfur protein PITA_48726.g Oxygen-evolving enhancer protein 2 PITA_44361.g oxygen-evolving enhancer protein
Regulatory gene	PITA_03146.g transcription factor PITA_05385.g ABSCISIC ACID-INSENSITIVE 5-like protein PITA_05572.g Ocs element-binding factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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Pathway

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.