Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PITA_38870.g
View in Genome Browser
Position
scaffold18313:10106-12438 (-)
2332bp
Gene Type
gene
Gene Description (Protein Product)
tRNA pseudouridine synthase
Organism
Pinus taeda
Also AS AT1G20370

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PITA_43258.g Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
PITA_42941.g 3' exoribonuclease family, domain 2
PITA_51577.g Transcription termination factor family protein
Regulatory gene
PITA_02159.g dof zinc finger protein
PITA_02788.g dof zinc finger protein
PITA_03587.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000049 tRNA binding MF
GO:0000959 mitochondrial RNA metabolic process BP
GO:0000963 mitochondrial RNA processing BP
GO:0001522 pseudouridine synthesis BP
GO:0002153 steroid receptor RNA activator RNA binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006399 tRNA metabolic process BP
GO:0006400 tRNA modification BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008033 tRNA processing BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009451 RNA modification BP
GO:0009982 pseudouridine synthase activity MF
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016556 mRNA modification BP
GO:0016853 isomerase activity MF
GO:0016866 intramolecular transferase activity MF
GO:0031119 tRNA pseudouridine synthesis BP
GO:0031974 membrane-enclosed lumen CC
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0070013 intracellular organelle lumen CC
GO:0070525 tRNA threonylcarbamoyladenosine metabolic process BP
GO:0070900 mitochondrial tRNA modification BP
GO:0070902 mitochondrial tRNA pseudouridine synthesis BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090646 mitochondrial tRNA processing BP
GO:0097159 organic cyclic compound binding MF
GO:0140053 mitochondrial gene expression BP
GO:1900864 mitochondrial RNA modification BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1990481 mRNA pseudouridine synthesis BP