Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PITA_39695.g
View in Genome Browser
Position
C5104275:19587-55094 (+)
35507bp
Gene Type
gene
Gene Description (Protein Product)
Tetratricopeptide repeat
Organism
Pinus taeda
Also AS AT2G31240

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PITA_49677.g U3 small nucleolar RNA-associated protein 6
PITA_42188.g Nucleolar protein
PITA_42262.g Pre-rRNA-processing protein
Regulatory gene
PITA_00010.g Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
PITA_00296.g Myb-related protein
PITA_00328.g B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005929 cilium CC
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0016043 cellular component organization BP
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030030 cell projection organization BP
GO:0030031 cell projection assembly BP
GO:0030111 regulation of Wnt signaling pathway BP
GO:0030178 negative regulation of Wnt signaling pathway BP
GO:0042995 cell projection CC
GO:0043226 organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044464 obsolete cell part CC
GO:0044782 cilium organization BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0060271 cilium assembly BP
GO:0060828 regulation of canonical Wnt signaling pathway BP
GO:0065007 biological regulation BP
GO:0070925 organelle assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090090 negative regulation of canonical Wnt signaling pathway BP
GO:0090175 regulation of establishment of planar polarity BP
GO:0120025 plasma membrane bounded cell projection CC
GO:0120031 plasma membrane bounded cell projection assembly BP
GO:0120036 plasma membrane bounded cell projection organization BP
GO:1905330 regulation of morphogenesis of an epithelium BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000027 regulation of animal organ morphogenesis BP
GO:2000050 regulation of non-canonical Wnt signaling pathway BP
GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway BP