Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PITA_42004.g
View in Genome Browser
Position
scaffold195715:222334-223196 (-)
862bp
Gene Type
gene
Gene Description (Protein Product)
"asparagine--tRNA ligase
Organism
Pinus taeda
Also AS AT1G70980

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PITA_43430.g asparagine--tRNA ligase, chloroplastic
PITA_49696.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Regulatory gene
PITA_00296.g Myb-related protein
PITA_00384.g Myb-related protein
PITA_01056.g Myb-like DNA-binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004812 aminoacyl-tRNA ligase activity MF
GO:0004816 asparagine-tRNA ligase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006399 tRNA metabolic process BP
GO:0006412 translation BP
GO:0006418 tRNA aminoacylation for protein translation BP
GO:0006421 asparaginyl-tRNA aminoacylation BP
GO:0006518 peptide metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016874 ligase activity MF
GO:0016875 ligase activity, forming carbon-oxygen bonds MF
GO:0019538 protein metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0043038 amino acid activation BP
GO:0043039 tRNA aminoacylation BP
GO:0043043 peptide biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0140098 catalytic activity, acting on RNA MF
GO:0140101 catalytic activity, acting on a tRNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map00970 Aminoacyl-tRNA biosynthesis -