PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	PITA_42693.g View in Genome Browser
Position	C5054715:35925-37706 (-) 1781bp
Gene Type	gene
Gene Description (Protein Product)	pre-mRNA-splicing factor
Organism	Pinus taeda
Also AS	AT4G02430

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	PITA_45913.g serine arginine-rich SC35-like splicing factor SCL28 PITA_47644.g Splicing factor 3B subunit 6-like protein PITA_46801.g U11 U12 small nuclear ribonucleoprotein 35 kDa
Regulatory gene	PITA_00047.g homeobox-leucine zipper protein PITA_00296.g Myb-related protein PITA_00384.g Myb-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.