Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PITA_47188.g
View in Genome Browser
Position
scaffold45975:38934-95669 (+)
56735bp
Gene Type
gene
Gene Description (Protein Product)
Chloroplastic group IIB intron splicing facilitator
Organism
Pinus taeda
Also AS AT5G19830

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PITA_50815.g Ribonuclease III family
PITA_47226.g Belongs to the AAA ATPase family
PITA_50194.g Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Regulatory gene
PITA_00088.g NAC domain-containing protein
PITA_00097.g NAC domain containing protein 28
PITA_00262.g NAC transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004045 aminoacyl-tRNA hydrolase activity MF
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0052689 carboxylic ester hydrolase activity MF
GO:0140098 catalytic activity, acting on RNA MF
GO:0140101 catalytic activity, acting on a tRNA MF