Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PITA_49463.g
View in Genome Browser
Position
super4219:487039-494059 (+)
7020bp
Gene Type
gene
Gene Description (Protein Product)
E3 ubiquitin-protein ligase
Organism
Pinus taeda
Also AS AT4G34040

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PITA_49965.g Pre-mRNA-splicing factor
PITA_51294.g Vam6 Vps39-like protein
PITA_50109.g CBS domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000209 protein polyubiquitination BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004842 ubiquitin-protein transferase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006935 chemotaxis BP
GO:0007275 multicellular organism development BP
GO:0007399 nervous system development BP
GO:0007409 axonogenesis BP
GO:0007411 axon guidance BP
GO:0007568 aging BP
GO:0008045 motor neuron axon guidance BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009605 response to external stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009791 post-embryonic development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010228 vegetative to reproductive phase transition of meristem BP
GO:0010259 multicellular organism aging BP
GO:0010468 regulation of gene expression BP
GO:0010498 proteasomal protein catabolic process BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0016043 cellular component organization BP
GO:0016567 protein ubiquitination BP
GO:0016740 transferase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0019941 modification-dependent protein catabolic process BP
GO:0021675 nerve development BP
GO:0022008 neurogenesis BP
GO:0022414 reproductive process BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030030 cell projection organization BP
GO:0030154 cell differentiation BP
GO:0030163 protein catabolic process BP
GO:0030182 neuron differentiation BP
GO:0030510 regulation of BMP signaling pathway BP
GO:0030513 positive regulation of BMP signaling pathway BP
GO:0031175 neuron projection development BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0032446 protein modification by small protein conjugation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032989 cellular component morphogenesis BP
GO:0032990 cell part morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0035107 appendage morphogenesis BP
GO:0035108 limb morphogenesis BP
GO:0035136 forelimb morphogenesis BP
GO:0036211 protein modification process BP
GO:0040011 locomotion BP
GO:0042221 response to chemical BP
GO:0042330 taxis BP
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0048468 cell development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048608 reproductive structure development BP
GO:0048666 neuron development BP
GO:0048667 cell morphogenesis involved in neuron differentiation BP
GO:0048699 generation of neurons BP
GO:0048731 system development BP
GO:0048736 appendage development BP
GO:0048812 neuron projection morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048858 cell projection morphogenesis BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0060173 limb development BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060384 innervation BP
GO:0061061 muscle structure development BP
GO:0061458 reproductive system development BP
GO:0061564 axon development BP
GO:0061630 ubiquitin protein ligase activity MF
GO:0061659 ubiquitin-like protein ligase activity MF
GO:0065007 biological regulation BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway BP
GO:0090100 positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway BP
GO:0090287 regulation of cellular response to growth factor stimulus BP
GO:0097485 neuron projection guidance BP
GO:0120036 plasma membrane bounded cell projection organization BP
GO:0120039 plasma membrane bounded cell projection morphogenesis BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP