Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PITA_50101.g
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Position
scaffold51017:102401-102938 (+)
537bp
Gene Type
gene
Gene Description (Protein Product)
Polyamine transporter
Organism
Pinus taeda
Also AS AT1G31830

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Regulatory gene
PITA_00047.g homeobox-leucine zipper protein
PITA_00296.g Myb-related protein
PITA_00384.g Myb-related protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003333 amino acid transmembrane transport BP
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005342 organic acid transmembrane transporter activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0006820 monoatomic anion transport BP
GO:0006865 amino acid transport BP
GO:0006950 response to stress BP
GO:0008150 biological_process BP
GO:0008509 monoatomic anion transmembrane transporter activity MF
GO:0008514 organic anion transmembrane transporter activity MF
GO:0009266 response to temperature stimulus BP
GO:0009408 response to heat BP
GO:0009628 response to abiotic stimulus BP
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015171 amino acid transmembrane transporter activity MF
GO:0015179 L-amino acid transmembrane transporter activity MF
GO:0015203 polyamine transmembrane transporter activity MF
GO:0015291 secondary active transmembrane transporter activity MF
GO:0015297 antiporter activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0015695 organic cation transport BP
GO:0015696 ammonium transmembrane transport BP
GO:0015711 organic anion transport BP
GO:0015807 L-amino acid transport BP
GO:0015839 cadaverine transport BP
GO:0015846 polyamine transport BP
GO:0015849 organic acid transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0022804 active transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0034220 monoatomic ion transmembrane transport BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0046942 carboxylic acid transport BP
GO:0046943 carboxylic acid transmembrane transporter activity MF
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0055085 transmembrane transport BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071944 cell periphery CC
GO:0098656 monoatomic anion transmembrane transport BP
GO:1902047 polyamine transmembrane transport BP
GO:1902475 L-alpha-amino acid transmembrane transport BP
GO:1903825 organic acid transmembrane transport BP
GO:1905039 carboxylic acid transmembrane transport BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.