Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC118045518
View in Genome Browser
Position
NW_023271301.1:392267-395329 (+)
3062bp
Gene Type
gene
Gene Description (Protein Product)
histone deacetylase
Organism
Populus alba
Also AS Potri.009G149400AT3G44750Potri.009G149400.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC118057446 Belongs to the histone deacetylase family. HD Type 1 subfamily
gene-LOC118056882 DEK C terminal domain
gene-LOC118046182 NUP50 (Nucleoporin 50 kDa)
Regulatory gene
gene-LOC118027547 LOB domain-containing protein
gene-LOC118027806 Cyclic dof factor
gene-LOC118028026 Telomere repeat-binding protein
Target gene
gene-E2229_mgp03 RIBOSOMAL protein
gene-E2229_mgp06 ATP synthase subunit C
gene-E2229_mgp07 RIBOSOMAL protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003002 regionalization BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004407 histone deacetylase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005730 nucleolus CC
GO:0006325 chromatin organization BP
GO:0006464 protein modification process BP
GO:0006476 protein deacetylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009292 horizontal gene transfer BP
GO:0009294 DNA-mediated transformation BP
GO:0009791 post-embryonic development BP
GO:0009798 axis specification BP
GO:0009943 adaxial/abaxial axis specification BP
GO:0009944 polarity specification of adaxial/abaxial axis BP
GO:0009955 adaxial/abaxial pattern specification BP
GO:0009987 cellular process BP
GO:0010154 fruit development BP
GO:0010162 seed dormancy process BP
GO:0010431 seed maturation BP
GO:0016043 cellular component organization BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016575 histone deacetylation BP
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides MF
GO:0019213 deacetylase activity MF
GO:0019538 protein metabolic process BP
GO:0021700 developmental maturation BP
GO:0022414 reproductive process BP
GO:0022611 dormancy process BP
GO:0022622 root system development BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0033558 protein lysine deacetylase activity MF
GO:0035601 protein deacylation BP
GO:0036211 protein modification process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044764 obsolete multi-organism cellular process BP
GO:0048316 seed development BP
GO:0048364 root development BP
GO:0048608 reproductive structure development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0051276 chromosome organization BP
GO:0051704 obsolete multi-organism process BP
GO:0061458 reproductive system development BP
GO:0065001 specification of axis polarity BP
GO:0070013 intracellular organelle lumen CC
GO:0071695 anatomical structure maturation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098732 macromolecule deacylation BP
GO:0099402 plant organ development BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP