Basic Information
Gene ID
gene-LOC118053666
Position
NW_023271533.1:320660-328235 (-)
7575bp
Gene Type
gene
Gene Description (Protein Product)
Nuclear pore complex protein
Organism
Also AS Potri.018G044300AT4G32910Potri.018G044300.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC118054639 Rae1-like protein
gene-LOC118054788 Belongs to the WD repeat SEC13 family
gene-LOC118054640 Nuclear pore complex protein
Regulatory gene
gene-LOC118027806 Cyclic dof factor
gene-LOC118027982 B3 DNA binding domain
gene-LOC118027984 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.