Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC118059198
View in Genome Browser
Position
NW_023271713.1:1010747-1016966 (-)
6219bp
Gene Type
gene
Gene Description (Protein Product)
E3 ubiquitin-protein ligase
Organism
Populus alba
Also AS Potri.009G099400AT4G34100Potri.009G099400.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC118062338 crabs claw
gene-LOC118062533
gene-LOC118062533 Beta-1,3-galactosyltransferase
Regulatory gene
gene-LOC118027806 Cyclic dof factor
gene-LOC118027982 B3 DNA binding domain
gene-LOC118027984 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000209 protein polyubiquitination BP
GO:0001101 response to acid chemical BP
GO:0002020 protease binding MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004842 ubiquitin-protein transferase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006629 lipid metabolic process BP
GO:0006720 isoprenoid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008299 isoprenoid biosynthetic process BP
GO:0008610 lipid biosynthetic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009628 response to abiotic stimulus BP
GO:0009698 phenylpropanoid metabolic process BP
GO:0009699 phenylpropanoid biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010025 wax biosynthetic process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010143 cutin biosynthetic process BP
GO:0010166 wax metabolic process BP
GO:0010243 response to organonitrogen compound BP
GO:0010345 suberin biosynthetic process BP
GO:0010498 proteasomal protein catabolic process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016567 protein ubiquitination BP
GO:0016740 transferase activity MF
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019538 protein metabolic process BP
GO:0019748 secondary metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0019899 enzyme binding MF
GO:0019941 modification-dependent protein catabolic process BP
GO:0030163 protein catabolic process BP
GO:0030176 obsolete integral component of endoplasmic reticulum membrane CC
GO:0030433 ubiquitin-dependent ERAD pathway BP
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031227 obsolete intrinsic component of endoplasmic reticulum membrane CC
GO:0031624 ubiquitin conjugating enzyme binding MF
GO:0031984 organelle subcompartment CC
GO:0032446 protein modification by small protein conjugation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0033554 cellular response to stress BP
GO:0034976 response to endoplasmic reticulum stress BP
GO:0036211 protein modification process BP
GO:0036503 ERAD pathway BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042221 response to chemical BP
GO:0042335 cuticle development BP
GO:0043085 positive regulation of catalytic activity BP
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0044093 positive regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044390 ubiquitin-like protein conjugating enzyme binding MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044550 secondary metabolite biosynthetic process BP
GO:0048518 positive regulation of biological process BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050896 response to stimulus BP
GO:0051341 regulation of oxidoreductase activity BP
GO:0051353 positive regulation of oxidoreductase activity BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051716 cellular response to stimulus BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0070936 protein K48-linked ubiquitination BP
GO:0071704 organic substance metabolic process BP
GO:0098827 endoplasmic reticulum subcompartment CC
GO:0140096 catalytic activity, acting on a protein MF
GO:1900490 obsolete positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901568 fatty acid derivative metabolic process BP
GO:1901570 fatty acid derivative biosynthetic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901698 response to nitrogen compound BP
GO:1901700 response to oxygen-containing compound BP
GO:1990381 ubiquitin-specific protease binding MF
GO:2001215 obsolete regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity BP
KEGG Term Name Description
map04141 Protein processing in endoplasmic reticulum The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.