PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC118060353 View in Genome Browser
Position	NW_023271733.1:91539-94407 (-) 2868bp
Gene Type	gene
Gene Description (Protein Product)	riboflavin biosynthesis protein
Organism	Populus alba
Also AS	Potri.001G234900AT5G59750Potri.001G234900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC118061512 Belongs to the pyruvate kinase family

gene-LOC118061369 Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions

gene-LOC118062451 Belongs to the GDA1 CD39 NTPase family

Regulatory gene

gene-LOC118027693 transcription factor

gene-LOC118027738 Myb-related protein

gene-LOC118027779 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006766	vitamin metabolic process	BP
GO:0006767	water-soluble vitamin metabolic process	BP
GO:0006771	riboflavin metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009231	riboflavin biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016829	lyase activity	MF
GO:0016830	carbon-carbon lyase activity	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042364	water-soluble vitamin biosynthetic process	BP
GO:0042726	flavin-containing compound metabolic process	BP
GO:0042727	flavin-containing compound biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00790	Folate biosynthesis	-
map00740	Riboflavin metabolism	-