PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC118061259 View in Genome Browser
Position	NW_023271757.1:385198-389988 (-) 4790bp
Gene Type	gene
Gene Description (Protein Product)	phosphatidylinositol 4-phosphate 5-kinase
Organism	Populus alba
Also AS	Potri.001G027900AT3G07960Potri.001G027900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC118061791 Type I inositol 1,4,5-trisphosphate 5-phosphatase

gene-LOC118062990 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

gene-LOC118061781 Ubiquitin-2 like Rad60 SUMO-like

Regulatory gene

gene-LOC118027467 NAC domain-containing protein

gene-LOC118027528 NAC domain-containing protein

gene-LOC118027806 Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0006629	lipid metabolic process	BP
GO:0006644	phospholipid metabolic process	BP
GO:0006650	glycerophospholipid metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006810	transport	BP
GO:0006897	endocytosis	BP
GO:0006898	receptor-mediated endocytosis	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016192	vesicle-mediated transport	BP
GO:0016301	kinase activity	MF
GO:0016307	phosphatidylinositol phosphate kinase activity	MF
GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016324	apical plasma membrane	CC
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0019637	organophosphate metabolic process	BP
GO:0030258	lipid modification	BP
GO:0042995	cell projection	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044425	obsolete membrane part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0045177	apical part of cell	CC
GO:0046486	glycerolipid metabolic process	BP
GO:0046488	phosphatidylinositol metabolic process	BP
GO:0046834	lipid phosphorylation	BP
GO:0046854	phosphatidylinositol phosphate biosynthetic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0072583	clathrin-dependent endocytosis	BP
GO:0090406	pollen tube	CC
GO:0098590	plasma membrane region	CC
GO:0098657	import into cell	BP
GO:0120025	plasma membrane bounded cell projection	CC

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
map04070	Phosphatidylinositol signaling system	-
map01100	Metabolic pathways	-
map00562	Inositol phosphate metabolism	-