Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC118061599
View in Genome Browser
Position
NW_023271788.1:489592-497818 (+)
8226bp
Gene Type
gene
Gene Description (Protein Product)
ATP-dependent RNA helicase SUPV3L1
Organism
Populus alba
Also AS Potri.010G084100AT4G14790Potri.010G084100.v4.1

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC118062990 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
gene-LOC118061781 Ubiquitin-2 like Rad60 SUMO-like
gene-LOC118063087 ubiquitin-60S ribosomal protein
Regulatory gene
gene-LOC118027806 Cyclic dof factor
gene-LOC118027982 B3 DNA binding domain
gene-LOC118027984 B3 DNA binding domain

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000177 cytoplasmic exosome (RNase complex) CC
GO:0000178 exosome (RNase complex) CC
GO:0000957 mitochondrial RNA catabolic process BP
GO:0000958 mitochondrial mRNA catabolic process BP
GO:0000959 mitochondrial RNA metabolic process BP
GO:0000960 regulation of mitochondrial RNA catabolic process BP
GO:0000962 positive regulation of mitochondrial RNA catabolic process BP
GO:0000963 mitochondrial RNA processing BP
GO:0000965 mitochondrial RNA 3'-end processing BP
GO:0001558 regulation of cell growth BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003678 DNA helicase activity MF
GO:0003723 RNA binding MF
GO:0003724 RNA helicase activity MF
GO:0003725 double-stranded RNA binding MF
GO:0003824 catalytic activity MF
GO:0004004 RNA helicase activity MF
GO:0004386 helicase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006310 DNA recombination BP
GO:0006325 chromatin organization BP
GO:0006396 RNA processing BP
GO:0006401 RNA catabolic process BP
GO:0006402 mRNA catabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006970 response to osmotic stress BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0007275 multicellular organism development BP
GO:0008026 helicase activity MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008186 ATP-dependent activity, acting on RNA MF
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009553 embryo sac development BP
GO:0009555 pollen development BP
GO:0009561 megagametogenesis BP
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009937 regulation of gibberellic acid mediated signaling pathway BP
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0010928 regulation of auxin mediated signaling pathway BP
GO:0010929 positive regulation of auxin mediated signaling pathway BP
GO:0010941 regulation of cell death BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030307 positive regulation of cell growth BP
GO:0031123 RNA 3'-end processing BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0032392 DNA geometric change BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032508 DNA duplex unwinding BP
GO:0032989 cellular component morphogenesis BP
GO:0032990 cell part morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0034458 3'-5' RNA helicase activity MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034655 nucleobase-containing compound catabolic process BP
GO:0035945 mitochondrial ncRNA surveillance BP
GO:0035946 mitochondrial mRNA surveillance BP
GO:0040008 regulation of growth BP
GO:0042623 ATP hydrolysis activity MF
GO:0042981 regulation of apoptotic process BP
GO:0043066 negative regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043069 negative regulation of programmed cell death BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043954 cellular component maintenance BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045025 mitochondrial degradosome CC
GO:0045927 positive regulation of growth BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0047484 regulation of response to osmotic stress BP
GO:0048229 gametophyte development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060548 negative regulation of cell death BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070035 obsolete purine NTP-dependent helicase activity MF
GO:0070584 mitochondrion morphogenesis BP
GO:0070827 obsolete chromatin maintenance BP
GO:0071025 RNA surveillance BP
GO:0071026 cytoplasmic RNA surveillance BP
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080036 regulation of cytokinin-activated signaling pathway BP
GO:0080038 positive regulation of cytokinin-activated signaling pathway BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0098798 mitochondrial protein-containing complex CC
GO:0140053 mitochondrial gene expression BP
GO:0140097 catalytic activity, acting on DNA MF
GO:0140098 catalytic activity, acting on RNA MF
GO:1901000 regulation of response to salt stress BP
GO:1901002 positive regulation of response to salt stress BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901575 organic substance catabolic process BP
GO:1902494 catalytic complex CC
GO:1902584 positive regulation of response to water deprivation BP
GO:1905354 exoribonuclease complex CC
GO:2000070 regulation of response to water deprivation BP
GO:2000827 mitochondrial RNA surveillance BP