PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC118061735 View in Genome Browser
Position	NW_023271052.1:3853923-3857967 (+) 4044bp
Gene Type	gene
Gene Description (Protein Product)	riboflavin kinase
Organism	Populus alba
Also AS	Potri.002G077200AT4G21470Potri.002G077200.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-PoalCp071 essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA B D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn

Regulatory gene

gene-LOC118027806 Cyclic dof factor

gene-LOC118027982 B3 DNA binding domain

gene-LOC118027984 B3 DNA binding domain

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000287	magnesium ion binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003919	FMN adenylyltransferase activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006915	apoptotic process	BP
GO:0006950	response to stress	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008219	cell death	BP
GO:0008531	riboflavin kinase activity	MF
GO:0009611	response to wounding	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0012501	programmed cell death	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016311	dephosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0016779	nucleotidyltransferase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016791	phosphatase activity	MF
GO:0019222	regulation of metabolic process	BP
GO:0033860	regulation of NAD(P)H oxidase activity	BP
GO:0033864	positive regulation of NAD(P)H oxidase activity	BP
GO:0042060	wound healing	BP
GO:0042578	phosphoric ester hydrolase activity	MF
GO:0043085	positive regulation of catalytic activity	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046872	metal ion binding	MF
GO:0048518	positive regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050896	response to stimulus	BP
GO:0051341	regulation of oxidoreductase activity	BP
GO:0051353	positive regulation of oxidoreductase activity	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070566	adenylyltransferase activity	MF
GO:0072593	reactive oxygen species metabolic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00740	Riboflavin metabolism	-