PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC118063002 View in Genome Browser
Position	NW_023271826.1:433381-434574 (+) 1193bp
Gene Type	gene
Gene Description (Protein Product)	psbQ-like protein 2
Organism	Populus alba
Also AS	Potri.001G416400AT3G01440Potri.001G416400.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-PoalCp050 One of the components of the core complex of photosystem II (PSII), required for its stability and or assembly. PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation

gene-LOC118063228 oxygen-evolving enhancer protein

Regulatory gene

gene-LOC118027693 transcription factor

gene-LOC118027738 Myb-related protein

gene-LOC118027779 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006091	generation of precursor metabolites and energy	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009055	electron transfer activity	MF
GO:0009344	nitrite reductase complex [NAD(P)H]	CC
GO:0009507	chloroplast	CC
GO:0009521	photosystem	CC
GO:0009523	photosystem II	CC
GO:0009532	plastid stroma	CC
GO:0009534	chloroplast thylakoid	CC
GO:0009535	chloroplast thylakoid membrane	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009579	thylakoid	CC
GO:0009654	photosystem II oxygen evolving complex	CC
GO:0009767	photosynthetic electron transport chain	BP
GO:0009987	cellular process	BP
GO:0015979	photosynthesis	BP
GO:0016020	membrane	CC
GO:0016491	oxidoreductase activity	MF
GO:0019684	photosynthesis, light reaction	BP
GO:0022900	electron transport chain	BP
GO:0031976	plastid thylakoid	CC
GO:0031977	thylakoid lumen	CC
GO:0031984	organelle subcompartment	CC
GO:0032991	protein-containing complex	CC
GO:0034357	photosynthetic membrane	CC
GO:0042651	thylakoid membrane	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044436	obsolete thylakoid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	MF
GO:0055035	plastid thylakoid membrane	CC
GO:0055114	obsolete oxidation-reduction process	BP
GO:0098796	membrane protein complex	CC
GO:1902494	catalytic complex	CC
GO:1990204	oxidoreductase complex	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.