PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC118063136 View in Genome Browser
Position	NW_023271835.1:1819477-1821845 (-) 2368bp
Gene Type	gene
Gene Description (Protein Product)	Histone H3.3-like
Organism	Populus alba
Also AS	Potri.005G072300AT5G10980Potri.005G072300.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC118063147 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

gene-LOC118063148 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

gene-LOC118063137 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Regulatory gene

gene-LOC118044326 GAGA binding protein-like family

gene-LOC118044327 GAGA binding protein-like family

gene-LOC118046478 Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000785	chromatin	CC
GO:0000786	nucleosome	CC
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003682	chromatin binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005694	chromosome	CC
GO:0006323	chromosome organization	BP
GO:0006325	chromatin organization	BP
GO:0006333	chromatin organization	BP
GO:0006334	nucleosome assembly	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0022607	cellular component assembly	BP
GO:0031490	chromatin DNA binding	MF
GO:0031491	nucleosome binding	MF
GO:0031492	nucleosomal DNA binding	MF
GO:0031497	chromatin organization	BP
GO:0032991	protein-containing complex	CC
GO:0032993	protein-DNA complex	CC
GO:0034622	protein-containing complex assembly	BP
GO:0034728	nucleosome organization	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044815	DNA packaging complex	CC
GO:0044877	protein-containing complex binding	MF
GO:0051276	chromosome organization	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065004	protein-DNA complex assembly	BP
GO:0071103	DNA conformation change	BP
GO:0071824	protein-DNA complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF