Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC118063477
View in Genome Browser
Position
NW_023271106.1:328817-331208 (+)
2391bp
Gene Type
gene
Gene Description (Protein Product)
Ribulose-phosphate 3-epimerase
Organism
Populus alba
Also AS Potri.001G332700AT3G01850Potri.001G332700.v4.1

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Regulatory gene
gene-LOC118027693 transcription factor
gene-LOC118027738 Myb-related protein
gene-LOC118027779 transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004750 D-ribulose-phosphate 3-epimerase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005975 carbohydrate metabolic process BP
GO:0005996 monosaccharide metabolic process BP
GO:0006081 cellular aldehyde metabolic process BP
GO:0006098 pentose-phosphate shunt BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006733 obsolete oxidoreduction coenzyme metabolic process BP
GO:0006739 NADP metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009052 pentose-phosphate shunt, non-oxidative branch BP
GO:0009056 catabolic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009987 cellular process BP
GO:0016052 carbohydrate catabolic process BP
GO:0016853 isomerase activity MF
GO:0016854 racemase and epimerase activity MF
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives MF
GO:0019321 pentose metabolic process BP
GO:0019323 pentose catabolic process BP
GO:0019362 pyridine nucleotide metabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019682 glyceraldehyde-3-phosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044262 cellular carbohydrate metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046365 monosaccharide catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046496 nicotinamide nucleotide metabolic process BP
GO:0046872 metal ion binding MF
GO:0051156 glucose 6-phosphate metabolic process BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0072524 pyridine-containing compound metabolic process BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901575 organic substance catabolic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00710 Carbon fixation in photosynthetic organisms -
map00040 Pentose and glucuronate interconversions -
map00030 Pentose phosphate pathway The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].