PPGR - Gene Detail

Basic Information

Gene ID	gene-PoalCp011 View in Genome Browser
Position	NC_008235.1:19696-22530 (-) 2834bp
Gene Type	gene
Gene Description (Protein Product)	DNA-directed RNA polymerase
Organism	Populus alba
Also AS	Potri.013G140850ATCG00180Potri.013G140850.v4.1

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-PoalCp012 rna polymerase

gene-PoalCp047 One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

gene-PoalCp046 ATP-dependent Clp protease proteolytic subunit

Regulatory gene

gene-LOC118027565 Myb-like DNA-binding domain

gene-LOC118027635 Heat stress transcription factor

gene-LOC118027806 Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0009295	nucleoid	CC
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC

KEGG Term	Name	Description
map03020	RNA polymerase	-