PPGR - Gene Detail

Basic Information

Gene ID	gene-PoalCp025 View in Genome Browser
Position	NC_008235.1:49812-50174 (-) 362bp
Gene Type	gene
Gene Description (Protein Product)	"NDH shuttles electrons from NAD(P)H plastoquinone
Organism	Populus alba
Also AS	Potri.013G163000ATCG00440Potri.013G163000.v4.1

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-PoalCp072 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

gene-PoalCp050 One of the components of the core complex of photosystem II (PSII), required for its stability and or assembly. PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation

gene-PoalCp026 ATP synthase epsilon chain

Regulatory gene

gene-LOC118027565 Myb-like DNA-binding domain

gene-LOC118027806 Cyclic dof factor

gene-LOC118027840 transcription

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003954	NADH dehydrogenase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0008137	NADH dehydrogenase (ubiquinone) activity	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0015979	photosynthesis	BP
GO:0016020	membrane	CC
GO:0016491	oxidoreductase activity	MF
GO:0016651	oxidoreductase activity, acting on NAD(P)H	MF
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	MF
GO:0030964	NADH dehydrogenase complex	CC
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0050136	NADH dehydrogenase (quinone) activity	MF
GO:0055114	obsolete oxidation-reduction process	BP
GO:0098796	membrane protein complex	CC
GO:1902494	catalytic complex	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00190	Oxidative phosphorylation	-