Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-H0E87_005498
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Position
CM027574.1:6459374-6462742 (-)
3368bp
Gene Type
gene
Gene Description (Protein Product)
Shikimate kinase
Organism
Populus deltoides
Also AS Podel.05G092600AT2G21940Potri.005G084600.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-H0E87_013408 Shikimate kinase
gene-H0E87_031125 shikimate dehydrogenase
gene-H0E87_030676 3-phosphoshikimate 1-carboxyvinyltransferase
Regulatory gene
gene-H0E87_000116 Myb-related protein
gene-H0E87_000339 cell division cycle 5-like
gene-H0E87_000789 ZF-HD protein dimerisation region

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000287 magnesium ion binding MF
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008652 amino acid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009072 aromatic amino acid metabolic process BP
GO:0009073 aromatic amino acid family biosynthetic process BP
GO:0009987 cellular process BP
GO:0016053 organic acid biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046872 metal ion binding MF
GO:0071704 organic substance metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00400 Phenylalanine, tyrosine and tryptophan biosynthesis -