Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-H0E87_020911
View in Genome Browser
Position
CM027577.1:16505964-16509503 (-)
3539bp
Gene Type
gene
Gene Description (Protein Product)
Lignin degradation and detoxification of lignin-derived products
Organism
Populus deltoides
Also AS Podel.08G078800AT2G38080Potri.008G064000.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-H0E87_023514 cyclic nucleotide-gated ion channel
gene-H0E87_029233 cyclic nucleotide-gated ion channel
gene-H0E87_031904 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Regulatory gene
gene-H0E87_000111 MYB-CC type transfactor, LHEQLE motif
gene-H0E87_000364 GATA transcription factor
gene-H0E87_000658 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0006725 cellular aromatic compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009698 phenylpropanoid metabolic process BP
GO:0009699 phenylpropanoid biosynthetic process BP
GO:0009808 lignin metabolic process BP
GO:0009809 lignin biosynthetic process BP
GO:0009832 plant-type cell wall biogenesis BP
GO:0009834 plant-type secondary cell wall biogenesis BP
GO:0009987 cellular process BP
GO:0016491 oxidoreductase activity MF
GO:0016722 oxidoreductase activity, acting on metal ions MF
GO:0019438 aromatic compound biosynthetic process BP
GO:0019748 secondary metabolic process BP
GO:0042546 cell wall biogenesis BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044550 secondary metabolite biosynthetic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071669 plant-type cell wall organization or biogenesis BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP