PPGR - Gene Detail

Basic Information

Gene ID	gene-H0E87_021185 View in Genome Browser
Position	CM027577.1:9336344-9345894 (+) 9550bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the argonaute family
Organism	Populus deltoides
Also AS	Podel.08G183400AT5G43810Potri.008G158800.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-H0E87_030130 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

gene-H0E87_022160 Belongs to the helicase family. Dicer subfamily

gene-H0E87_022602 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Regulatory gene

gene-H0E87_001654 GAGA binding protein-like family

gene-H0E87_001697 GAGA binding protein-like family

gene-H0E87_006046 Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0002252	immune effector process	BP
GO:0002376	immune system process	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0005488	binding	MF
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009615	response to virus	BP
GO:0009987	cellular process	BP
GO:0010586	miRNA metabolic process	BP
GO:0016070	RNA metabolic process	BP
GO:0019827	stem cell population maintenance	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0035019	somatic stem cell population maintenance	BP
GO:0035198	miRNA binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048509	regulation of meristem development	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050896	response to stimulus	BP
GO:0051607	defense response to virus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0061980	regulatory RNA binding	MF
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0098542	defense response to other organism	BP
GO:0098727	maintenance of cell number	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1902183	regulation of shoot apical meristem development	BP