PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-H0E87_021830 View in Genome Browser
Position	CM027577.1:16728038-16729450 (-) 1412bp
Gene Type	gene
Gene Description (Protein Product)	Mur ligase middle domain
Organism	Populus deltoides
Also AS	Podel.08G074800AT4G38040Potri.008G060500.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-H0E87_022831 Interconversion of serine and glycine gene-H0E87_024557 Interconversion of serine and glycine gene-H0E87_021927 Serine hydroxymethyltransferase
Regulatory gene	gene-H0E87_000273 B3 domain-containing gene-H0E87_000789 ZF-HD protein dimerisation region gene-H0E87_001100 ZF-HD protein dimerisation region

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004326	tetrahydrofolylpolyglutamate synthase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006575	cellular modified amino acid metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006760	folic acid-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009396	folic acid-containing compound biosynthetic process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009888	tissue development	BP
GO:0009987	cellular process	BP
GO:0010015	root morphogenesis	BP
GO:0010053	root epidermal cell differentiation	BP
GO:0010054	trichoblast differentiation	BP
GO:0010449	root meristem growth	BP
GO:0016049	cell growth	BP
GO:0016053	organic acid biosynthetic process	BP
GO:0016874	ligase activity	MF
GO:0016879	ligase activity, forming carbon-nitrogen bonds	MF
GO:0016881	acid-amino acid ligase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0021700	developmental maturation	BP
GO:0022622	root system development	BP
GO:0030154	cell differentiation	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035266	meristem growth	BP
GO:0040007	growth	BP
GO:0042398	cellular modified amino acid biosynthetic process	BP
GO:0042558	pteridine-containing compound metabolic process	BP
GO:0042559	pteridine-containing compound biosynthetic process	BP
GO:0043436	oxoacid metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046900	tetrahydrofolylpolyglutamate metabolic process	BP
GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	BP
GO:0048364	root development	BP
GO:0048468	cell development	BP
GO:0048469	cell maturation	BP
GO:0048507	meristem development	BP
GO:0048532	anatomical structure arrangement	BP
GO:0048588	developmental cell growth	BP
GO:0048589	developmental growth	BP
GO:0048731	system development	BP
GO:0048764	trichoblast maturation	BP
GO:0048765	root hair cell differentiation	BP
GO:0048767	root hair elongation	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0071695	anatomical structure maturation	BP
GO:0071704	organic substance metabolic process	BP
GO:0080147	root hair cell development	BP
GO:0090558	plant epidermis development	BP
GO:0090627	plant epidermal cell differentiation	BP
GO:0099402	plant organ development	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1904961	quiescent center organization	BP
GO:1905392	plant organ morphogenesis	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00790	Folate biosynthesis	-