Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-H0E87_028649
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Position
CM027572.1:13667797-13671772 (-)
3975bp
Gene Type
gene
Gene Description (Protein Product)
Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation
Organism
Populus deltoides
Also AS Podel.03G067200AT1G54210Potri.003G064300.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-H0E87_031185 Ubiquitin-like-conjugating enzyme
gene-H0E87_031908 Serine threonine-protein kinase
gene-H0E87_029982 Autophagy-related protein C terminal domain
Regulatory gene
gene-H0E87_001144 Cyclic dof factor
gene-H0E87_001635 MADS-box transcription factor
gene-H0E87_001832 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000045 autophagosome assembly BP
GO:0000407 phagophore assembly site CC
GO:0000422 autophagy of mitochondrion BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006464 protein modification process BP
GO:0006497 protein lipidation BP
GO:0006501 C-terminal protein lipidation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006914 autophagy BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0007033 vacuole organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016236 macroautophagy BP
GO:0016740 transferase activity MF
GO:0018410 C-terminal protein amino acid modification BP
GO:0019538 protein metabolic process BP
GO:0019776 Atg8 ligase activity MF
GO:0022411 cellular component disassembly BP
GO:0022607 cellular component assembly BP
GO:0032991 protein-containing complex CC
GO:0034045 phagophore assembly site membrane CC
GO:0034274 Atg12-Atg5-Atg16 complex CC
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0036211 protein modification process BP
GO:0042157 lipoprotein metabolic process BP
GO:0042158 lipoprotein biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043687 post-translational protein modification BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044804 autophagy of nucleus BP
GO:0061726 mitochondrion disassembly BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0070925 organelle assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098805 membrane CC
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1903008 organelle disassembly BP
GO:1905037 autophagosome organization BP
GO:1990234 transferase complex CC