PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-H0E87_030008 View in Genome Browser
Position	CM027572.1:5414095-5418741 (+) 4646bp
Gene Type	gene
Gene Description (Protein Product)	Glycine--tRNA ligase 1
Organism	Populus deltoides
Also AS	Podel.03G174300AT1G29880Potri.003G162300.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-H0E87_030898 glycine--tRNA ligase gene-H0E87_031811 threonine-tRNA ligase gene-H0E87_030827 tyrosine--tRNA
Regulatory gene	gene-H0E87_001144 Cyclic dof factor gene-H0E87_001635 MADS-box transcription factor gene-H0E87_001832 Dof zinc finger protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000959	mitochondrial RNA metabolic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004812	aminoacyl-tRNA ligase activity	MF
GO:0004820	glycine-tRNA ligase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005768	endosome	CC
GO:0005794	Golgi apparatus	CC
GO:0005802	trans-Golgi network	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006399	tRNA metabolic process	BP
GO:0006412	translation	BP
GO:0006418	tRNA aminoacylation for protein translation	BP
GO:0006426	glycyl-tRNA aminoacylation	BP
GO:0006518	peptide metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009165	nucleotide biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0010467	gene expression	BP
GO:0012505	endomembrane system	CC
GO:0015959	diadenosine polyphosphate metabolic process	BP
GO:0015960	diadenosine polyphosphate biosynthetic process	BP
GO:0015965	diadenosine tetraphosphate metabolic process	BP
GO:0015966	diadenosine tetraphosphate biosynthetic process	BP
GO:0016070	RNA metabolic process	BP
GO:0016874	ligase activity	MF
GO:0016875	ligase activity, forming carbon-oxygen bonds	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019538	protein metabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0031410	cytoplasmic vesicle	CC
GO:0031982	vesicle	CC
GO:0031984	organelle subcompartment	CC
GO:0032543	mitochondrial translation	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042221	response to chemical	BP
GO:0043038	amino acid activation	BP
GO:0043039	tRNA aminoacylation	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0046686	response to cadmium ion	BP
GO:0046983	protein dimerization activity	MF
GO:0050896	response to stimulus	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0070127	tRNA aminoacylation for mitochondrial protein translation	BP
GO:0070150	mitochondrial glycyl-tRNA aminoacylation	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:0097708	intracellular vesicle	CC
GO:0098791	Golgi apparatus subcompartment	CC
GO:0140053	mitochondrial gene expression	BP
GO:0140098	catalytic activity, acting on RNA	MF
GO:0140101	catalytic activity, acting on a tRNA	MF
GO:1901293	nucleoside phosphate biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map00970	Aminoacyl-tRNA biosynthesis	-