Basic Information
Gene ID
gene-H0E87_031370
Position
CM027583.1:18258944-18261572 (+)
2628bp
Gene Type
gene
Gene Description (Protein Product)
Small ubiquitin-related modifier
Organism
Also AS Podel.14G193100AT4G26840Potri.014G190300.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-H0E87_031965 Belongs to the ubiquitin-conjugating enzyme family
gene-H0E87_031510 DnaJ homolog subfamily B member
gene-H0E87_031685 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Regulatory gene
gene-H0E87_001654 GAGA binding protein-like family
gene-H0E87_001697 GAGA binding protein-like family
gene-H0E87_006046 Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.