Basic Information
Gene ID
gene-H0E87_032008
Position
CM027583.1:8482223-8484082 (-)
1859bp
Gene Type
gene
Gene Description (Protein Product)
ubiquitin-40S ribosomal protein
Organism
Also AS Podel.01G027800AT2G47110Potri.014G115100.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-H0E87_032117 Belongs to the eukaryotic ribosomal protein eL13 family
gene-H0E87_032014 60s ribosomal protein
gene-H0E87_032140 Belongs to the eukaryotic ribosomal protein eL20 family
Regulatory gene
gene-H0E87_000273 B3 domain-containing
gene-H0E87_001430 B3 DNA binding domain
gene-H0E87_001461 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map04120 Ubiquitin mediated proteolysis Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
map03010 Ribosome -