PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC105123113 View in Genome Browser
Position	NW_011499855.1:2853487-2854577 (+) 1090bp
Gene Type	gene
Gene Description (Protein Product)	ribosomal small subunit assembly
Organism	Populus euphratica
Also AS	Potri.001G069100AT3G61110Potri.001G069100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-LOC105139568 Belongs to the universal ribosomal protein uS3 family gene-LOC105128591 Belongs to the universal ribosomal protein uS3 family gene-LOC105136052 40S ribosomal protein
Regulatory gene	gene-LOC105107464 B3 domain-containing transcription factor gene-LOC105107546 Dof zinc finger protein gene-LOC105107871 B3 domain-containing protein Os01g0234100-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000028	ribosomal small subunit assembly	BP
GO:0000075	cell cycle checkpoint signaling	BP
GO:0000077	DNA damage checkpoint signaling	BP
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	BP
GO:0000278	mitotic cell cycle	BP
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	BP
GO:0000469	cleavage involved in rRNA processing	BP
GO:0000478	endonucleolytic cleavage involved in rRNA processing	BP
GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	BP
GO:0000956	nuclear-transcribed mRNA catabolic process	BP
GO:0002181	cytoplasmic translation	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0003735	structural constituent of ribosome	MF
GO:0005198	structural molecule activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005840	ribosome	CC
GO:0005844	polysome	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006401	RNA catabolic process	BP
GO:0006402	mRNA catabolic process	BP
GO:0006412	translation	BP
GO:0006413	translational initiation	BP
GO:0006417	regulation of translation	BP
GO:0006518	peptide metabolic process	BP
GO:0006605	protein targeting	BP
GO:0006612	protein targeting to membrane	BP
GO:0006613	cotranslational protein targeting to membrane	BP
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006915	apoptotic process	BP
GO:0006919	activation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0006978	DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007093	mitotic cell cycle checkpoint signaling	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008047	enzyme activator activity	MF
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008219	cell death	BP
GO:0008270	zinc ion binding	MF
GO:0008283	cell population proliferation	BP
GO:0008494	translation activator activity	MF
GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	BP
GO:0008656	cysteine-type endopeptidase activator activity involved in apoptotic process	MF
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009506	plasmodesma	CC
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010564	regulation of cell cycle process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010941	regulation of cell death	BP
GO:0010942	positive regulation of cell death	BP
GO:0010948	negative regulation of cell cycle process	BP
GO:0010950	positive regulation of endopeptidase activity	BP
GO:0010952	positive regulation of peptidase activity	BP
GO:0012501	programmed cell death	BP
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015935	small ribosomal subunit	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016504	peptidase activator activity	MF
GO:0016505	peptidase activator activity involved in apoptotic process	MF
GO:0019222	regulation of metabolic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0022402	cell cycle process	BP
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0022626	cytosolic ribosome	CC
GO:0022627	cytosolic small ribosomal subunit	CC
GO:0023052	signaling	BP
GO:0030054	cell junction	CC
GO:0030162	regulation of proteolysis	BP
GO:0030234	enzyme regulator activity	MF
GO:0030312	external encapsulating structure	CC
GO:0030330	DNA damage response, signal transduction by p53 class mediator	BP
GO:0030490	maturation of SSU-rRNA	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031570	DNA integrity checkpoint signaling	BP
GO:0031571	mitotic G1 DNA damage checkpoint signaling	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033365	protein localization to organelle	BP
GO:0033554	cellular response to stress	BP
GO:0034248	regulation of amide metabolic process	BP
GO:0034250	positive regulation of amide metabolic process	BP
GO:0034470	ncRNA processing	BP
GO:0034613	protein localization	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0035556	intracellular signal transduction	BP
GO:0042254	ribosome biogenesis	BP
GO:0042255	ribosome assembly	BP
GO:0042274	ribosomal small subunit biogenesis	BP
GO:0042770	signal transduction in response to DNA damage	BP
GO:0042771	intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	BP
GO:0042772	DNA damage response, signal transduction resulting in transcription	BP
GO:0042788	polysomal ribosome	CC
GO:0042886	amide transport	BP
GO:0042981	regulation of apoptotic process	BP
GO:0043028	cysteine-type endopeptidase regulator activity involved in apoptotic process	MF
GO:0043043	peptide biosynthetic process	BP
GO:0043065	positive regulation of apoptotic process	BP
GO:0043067	regulation of programmed cell death	BP
GO:0043068	positive regulation of programmed cell death	BP
GO:0043085	positive regulation of catalytic activity	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0043281	regulation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044391	ribosomal subunit	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044773	mitotic DNA damage checkpoint signaling	BP
GO:0044774	mitotic DNA integrity checkpoint signaling	BP
GO:0044783	mitotic G1 DNA damage checkpoint signaling	BP
GO:0044819	mitotic G1/S transition checkpoint signaling	BP
GO:0045047	protein targeting to ER	BP
GO:0045182	translation regulator activity	MF
GO:0045184	establishment of protein localization	BP
GO:0045727	positive regulation of translation	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045862	positive regulation of proteolysis	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0046872	metal ion binding	MF
GO:0046907	intracellular transport	BP
GO:0046914	transition metal ion binding	MF
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051345	positive regulation of hydrolase activity	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0052547	regulation of peptidase activity	BP
GO:0052548	regulation of endopeptidase activity	BP
GO:0055044	symplast	CC
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061134	peptidase regulator activity	MF
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070727	cellular macromolecule localization	BP
GO:0070925	organelle assembly	BP
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0072331	signal transduction by p53 class mediator	BP
GO:0072332	intrinsic apoptotic signaling pathway by p53 class mediator	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0072599	establishment of protein localization to endoplasmic reticulum	BP
GO:0072657	protein localization to membrane	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090079	translation regulator activity, nucleic acid binding	MF
GO:0090150	establishment of protein localization to membrane	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090305	nucleic acid phosphodiester bond hydrolysis	BP
GO:0090501	RNA phosphodiester bond hydrolysis	BP
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097190	apoptotic signaling pathway	BP
GO:0097193	intrinsic apoptotic signaling pathway	BP
GO:0098772	molecular function regulator activity	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901987	regulation of cell cycle phase transition	BP
GO:1901988	negative regulation of cell cycle phase transition	BP
GO:1901990	regulation of mitotic cell cycle phase transition	BP
GO:1901991	negative regulation of mitotic cell cycle phase transition	BP
GO:1902806	regulation of cell cycle G1/S phase transition	BP
GO:1902807	negative regulation of cell cycle G1/S phase transition	BP
GO:1903047	mitotic cell cycle process	BP
GO:1990904	ribonucleoprotein complex	CC
GO:2000045	regulation of G1/S transition of mitotic cell cycle	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000116	regulation of cysteine-type endopeptidase activity	BP
GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	BP
GO:2001056	positive regulation of cysteine-type endopeptidase activity	BP

KEGG Term	Name	Description
map03010	Ribosome	-