Basic Information
Gene ID
gene-LOC105135526
Position
NW_011499924.1:848529-853000 (-)
4471bp
Gene Type
gene
Gene Description (Protein Product)
Ubiquitin-2 like Rad60 SUMO-like
Organism
Also AS Potri.010G118900AT1G68185Potri.010G118900.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC105141628 Small ubiquitin-related modifier
gene-LOC105141251 Splicing factor, suppressor of white-apricot homolog
gene-LOC105142434 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Regulatory gene
gene-LOC105107546 Dof zinc finger protein
gene-LOC105107883 Dof zinc finger protein
gene-LOC105108074 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.