Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC105137769
View in Genome Browser
Position
NW_011499948.1:763290-769521 (-)
6231bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the class-I aminoacyl-tRNA synthetase family
Organism
Populus euphratica
Also AS Potri.017G057700AT4G13780Potri.017G057700.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC105138940 Belongs to the class-I aminoacyl-tRNA synthetase family
gene-LOC105142108 Elongation factor
gene-LOC105140256 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
Regulatory gene
gene-LOC105107202 Transcription factor
gene-LOC105107546 Dof zinc finger protein
gene-LOC105107568 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006399 tRNA metabolic process BP
GO:0006412 translation BP
GO:0006418 tRNA aminoacylation for protein translation BP
GO:0006518 peptide metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042221 response to chemical BP
GO:0043038 amino acid activation BP
GO:0043039 tRNA aminoacylation BP
GO:0043043 peptide biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046686 response to cadmium ion BP
GO:0050896 response to stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00970 Aminoacyl-tRNA biosynthesis -
map00450 Selenocompound metabolism -