PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC105139236 View in Genome Browser
Position	NW_011499970.1:572425-578577 (-) 6152bp
Gene Type	gene
Gene Description (Protein Product)	RING-type E3 ubiquitin transferase
Organism	Populus euphratica
Also AS	Potri.004G083900AT5G37490Potri.004G083900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-LOC105139642 WEB family protein At5g16730, chloroplastic-like gene-LOC105140373 Indole-3-acetic acid-amido synthetase gene-LOC105140676 E3 ubiquitin-protein ligase
Regulatory gene	gene-LOC105107546 Dof zinc finger protein gene-LOC105107883 Dof zinc finger protein gene-LOC105108074 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0008150	biological_process	BP
GO:0010033	response to organic substance	BP
GO:0010200	response to chitin	BP
GO:0010243	response to organonitrogen compound	BP
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0050896	response to stimulus	BP
GO:1901698	response to nitrogen compound	BP
GO:1901700	response to oxygen-containing compound	BP