PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC105139339 View in Genome Browser
Position	NW_011499972.1:551411-554378 (-) 2967bp
Gene Type	gene
Gene Description (Protein Product)	Ubiquitin-conjugating enzyme E2 variant
Organism	Populus euphratica
Also AS	Potri.016G073100AT2G36060Potri.016G073100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC105139801 ubiquitin-60S ribosomal protein

gene-LOC105141221 Belongs to the ubiquitin-conjugating enzyme family

gene-LOC105142396 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Regulatory gene

gene-LOC105107202 Transcription factor

gene-LOC105107546 Dof zinc finger protein

gene-LOC105107568 transcription factor

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000209	protein polyubiquitination	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004842	ubiquitin-protein transferase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006301	postreplication repair	BP
GO:0006464	protein modification process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0016567	protein ubiquitination	BP
GO:0016740	transferase activity	MF
GO:0019538	protein metabolic process	BP
GO:0019787	ubiquitin-like protein transferase activity	MF
GO:0019899	enzyme binding	MF
GO:0031625	ubiquitin protein ligase binding	MF
GO:0032446	protein modification by small protein conjugation	BP
GO:0033554	cellular response to stress	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0036211	protein modification process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044389	ubiquitin-like protein ligase binding	MF
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0061630	ubiquitin protein ligase activity	MF
GO:0061659	ubiquitin-like protein ligase activity	MF
GO:0070534	protein K63-linked ubiquitination	BP
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP