Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC105139596
View in Genome Browser
Position
NW_011499977.1:374079-381157 (-)
7078bp
Gene Type
gene
Gene Description (Protein Product)
Isovaleryl-CoA dehydrogenase
Organism
Populus euphratica
Also AS Potri.009G011700AT3G45300Potri.009G011700.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC105141278 Converts proline to delta-1-pyrroline-5-carboxylate
gene-LOC105142396 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
gene-LOC105142577 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Regulatory gene
gene-LOC105107546 Dof zinc finger protein
gene-LOC105107624 AP2-like ethylene-responsive transcription factor
gene-LOC105107883 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003853 2-methylacyl-CoA dehydrogenase activity MF
GO:0003995 acyl-CoA dehydrogenase activity MF
GO:0005488 binding MF
GO:0005524 ATP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006163 purine nucleotide metabolic process BP
GO:0006195 purine nucleotide catabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006551 leucine metabolic process BP
GO:0006552 leucine catabolic process BP
GO:0006637 acyl-CoA metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008470 isovaleryl-CoA dehydrogenase activity MF
GO:0009056 catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009063 amino acid catabolic process BP
GO:0009081 branched-chain amino acid metabolic process BP
GO:0009083 branched-chain amino acid catabolic process BP
GO:0009109 obsolete coenzyme catabolic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009150 purine ribonucleotide metabolic process BP
GO:0009154 purine ribonucleotide catabolic process BP
GO:0009166 nucleotide catabolic process BP
GO:0009259 ribonucleotide metabolic process BP
GO:0009261 ribonucleotide catabolic process BP
GO:0009987 cellular process BP
GO:0016054 organic acid catabolic process BP
GO:0016491 oxidoreductase activity MF
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0017076 purine nucleotide binding MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030554 adenyl nucleotide binding MF
GO:0031974 membrane-enclosed lumen CC
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032559 adenyl ribonucleotide binding MF
GO:0033865 nucleoside bisphosphate metabolic process BP
GO:0033869 nucleoside bisphosphate catabolic process BP
GO:0033875 ribonucleoside bisphosphate metabolic process BP
GO:0034031 ribonucleoside bisphosphate catabolic process BP
GO:0034032 purine nucleoside bisphosphate metabolic process BP
GO:0034034 purine nucleoside bisphosphate catabolic process BP
GO:0034404 nucleobase-containing small molecule biosynthetic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0034655 nucleobase-containing compound catabolic process BP
GO:0035337 fatty-acyl-CoA metabolic process BP
GO:0035383 thioester metabolic process BP
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0036115 fatty-acyl-CoA catabolic process BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044273 sulfur compound catabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046395 carboxylic acid catabolic process BP
GO:0046434 organophosphate catabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051187 obsolete cofactor catabolic process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:0072521 purine-containing compound metabolic process BP
GO:0072523 purine-containing compound catabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901136 carbohydrate derivative catabolic process BP
GO:1901265 nucleoside phosphate binding MF
GO:1901292 nucleoside phosphate catabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901568 fatty acid derivative metabolic process BP
GO:1901569 fatty acid derivative catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901606 alpha-amino acid catabolic process BP
GO:1902189 2-methylbutanoyl-CoA(4-) metabolic process BP
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process BP
GO:1902192 2-methylbut-2-enoyl-CoA(4-) metabolic process BP
GO:1902195 isovaleryl-CoA(4-) metabolic process BP
GO:1902196 isovaleryl-CoA(4-) catabolic process BP
GO:1902198 3-methylbut-2-enoyl-CoA(4-) metabolic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00280 Valine, leucine and isoleucine degradation -