Basic Information
Gene ID
gene-LOC105140345
Position
NW_011499990.1:499559-502609 (-)
3050bp
Gene Type
gene
Gene Description (Protein Product)
Involved in the biogenesis of the 60S ribosomal subunit
Organism
Also AS Potri.001G258900AT1G50920Potri.001G258900.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC105142544 Cell division control protein 48 homolog C-like
gene-LOC105140410 Protein ROOT INITIATION DEFECTIVE 3-like
gene-LOC105142705 mediator of RNA polymerase II transcription subunit
Regulatory gene
gene-LOC105108215 GAGA binding protein-like family
gene-LOC105108216 GAGA binding protein-like family
gene-LOC105121488 GAGA binding protein-like family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0016020 membrane CC
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.