Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC105140889
View in Genome Browser
Position
NW_011500001.1:472329-476349 (+)
4020bp
Gene Type
gene
Gene Description (Protein Product)
Ig-like domain from next to BRCA1 gene
Organism
Populus euphratica
Also AS Potri.015G084000AT4G24690Potri.015G084000.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC105141667 Belongs to the ATG8 family
gene-LOC105142165 Autophagy-related protein
gene-LOC105142577 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Regulatory gene
gene-LOC105107172 NAC domain-containing protein
gene-LOC105107292 NAC transcription factor
gene-LOC105107295 NAC domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0005773 vacuole CC
GO:0005829 cytosol CC
GO:0006914 autophagy BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016043 cellular component organization BP
GO:0016236 macroautophagy BP
GO:0022607 cellular component assembly BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032182 ubiquitin-like protein binding MF
GO:0034622 protein-containing complex assembly BP
GO:0043130 ubiquitin binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0051258 protein polymerization BP
GO:0051259 protein complex oligomerization BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0065003 protein-containing complex assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0097708 intracellular vesicle CC