PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC105141114 View in Genome Browser
Position	NW_011500005.1:339099-341194 (-) 2095bp
Gene Type	gene
Gene Description (Protein Product)	60S ribosomal protein
Organism	Populus euphratica
Also AS	Potri.010G250900AT3G13580Potri.010G250900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-LOC105142487 Belongs to the eukaryotic ribosomal protein eL13 family gene-LOC105142651 60S ribosomal Protein gene-LOC105142028 Belongs to the eukaryotic ribosomal protein eL19 family
Regulatory gene	gene-LOC105107202 Transcription factor gene-LOC105107464 B3 domain-containing transcription factor gene-LOC105107546 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	BP
GO:0000470	maturation of LSU-rRNA	BP
GO:0002181	cytoplasmic translation	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0003735	structural constituent of ribosome	MF
GO:0005198	structural molecule activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005829	cytosol	CC
GO:0005840	ribosome	CC
GO:0005844	polysome	CC
GO:0005886	plasma membrane	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006412	translation	BP
GO:0006518	peptide metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0015934	large ribosomal subunit	CC
GO:0016020	membrane	CC
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022625	cytosolic large ribosomal subunit	CC
GO:0022626	cytosolic ribosome	CC
GO:0030312	external encapsulating structure	CC
GO:0031090	organelle membrane	CC
GO:0032991	protein-containing complex	CC
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0042273	ribosomal large subunit biogenesis	BP
GO:0042788	polysomal ribosome	CC
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044391	ribosomal subunit	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03010	Ribosome	-