Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC105141575
View in Genome Browser
Position
NW_011500013.1:475697-480931 (-)
5234bp
Gene Type
gene
Gene Description (Protein Product)
Prolycopene isomerase
Organism
Populus euphratica
Also AS Potri.006G199600AT1G06820Potri.006G199600.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC105142349 Phytoene synthase
gene-LOC105141825 Squalene synthase-like
gene-LOC105142226 Magnesium-chelatase subunit ChlH
Regulatory gene
gene-LOC105108215 GAGA binding protein-like family
gene-LOC105108216 GAGA binding protein-like family
gene-LOC105108379 MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009657 plastid organization BP
GO:0009662 etioplast organization BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016491 oxidoreductase activity MF
GO:0016853 isomerase activity MF
GO:0016859 cis-trans isomerase activity MF
GO:0044464 obsolete cell part CC
GO:0046608 carotenoid isomerase activity MF
GO:0055114 obsolete oxidation-reduction process BP
GO:0071840 cellular component organization or biogenesis BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00906 Carotenoid biosynthesis -