PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC105141958 View in Genome Browser
Position	NW_011500022.1:263796-266387 (+) 2591bp
Gene Type	gene
Gene Description (Protein Product)	Aminotransferase
Organism	Populus euphratica
Also AS	Potri.007G137950AT5G53970Potri.007G137950.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-LOC105142162 Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine gene-LOC105142454 Aspartate aminotransferase
Regulatory gene	gene-LOC105107546 Dof zinc finger protein gene-LOC105107650 homeobox-leucine zipper protein gene-LOC105107883 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001101	response to acid chemical	BP
GO:0001558	regulation of cell growth	BP
GO:0001560	regulation of cell growth by extracellular stimulus	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004121	cystathionine beta-lyase activity	MF
GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity	MF
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006570	tyrosine metabolic process	BP
GO:0006572	tyrosine catabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0006775	fat-soluble vitamin metabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0006972	hyperosmotic response	BP
GO:0007154	cell communication	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008483	transaminase activity	MF
GO:0009056	catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009063	amino acid catabolic process	BP
GO:0009072	aromatic amino acid metabolic process	BP
GO:0009074	aromatic amino acid family catabolic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009605	response to external stimulus	BP
GO:0009611	response to wounding	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009636	response to toxic substance	BP
GO:0009651	response to salt stress	BP
GO:0009683	indoleacetic acid metabolic process	BP
GO:0009684	indoleacetic acid biosynthetic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0009753	response to jasmonic acid	BP
GO:0009850	auxin metabolic process	BP
GO:0009851	auxin biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0009991	response to extracellular stimulus	BP
GO:0010033	response to organic substance	BP
GO:0010188	response to microbial phytotoxin	BP
GO:0010189	vitamin E biosynthetic process	BP
GO:0010817	regulation of hormone levels	BP
GO:0016020	membrane	CC
GO:0016053	organic acid biosynthetic process	BP
GO:0016054	organic acid catabolic process	BP
GO:0016143	S-glycoside metabolic process	BP
GO:0016144	S-glycoside biosynthetic process	BP
GO:0016740	transferase activity	MF
GO:0016769	transferase activity, transferring nitrogenous groups	MF
GO:0016829	lyase activity	MF
GO:0016846	carbon-sulfur lyase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0019748	secondary metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0019757	glycosinolate metabolic process	BP
GO:0019758	glycosinolate biosynthetic process	BP
GO:0019760	glucosinolate metabolic process	BP
GO:0019761	glucosinolate biosynthetic process	BP
GO:0022622	root system development	BP
GO:0031668	cellular response to extracellular stimulus	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0033993	response to lipid	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034754	hormone metabolic process	BP
GO:0040008	regulation of growth	BP
GO:0042221	response to chemical	BP
GO:0042360	vitamin E metabolic process	BP
GO:0042362	fat-soluble vitamin biosynthetic process	BP
GO:0042430	indole-containing compound metabolic process	BP
GO:0042435	indole-containing compound biosynthetic process	BP
GO:0042445	hormone metabolic process	BP
GO:0042446	hormone biosynthetic process	BP
GO:0042538	hyperosmotic salinity response	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044272	sulfur compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044282	small molecule catabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0044550	secondary metabolite biosynthetic process	BP
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0046395	carboxylic acid catabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048046	apoplast	CC
GO:0048364	root development	BP
GO:0048731	system development	BP
GO:0048830	adventitious root development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051716	cellular response to stimulus	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070547	L-tyrosine aminotransferase activity	MF
GO:0071496	cellular response to external stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0072330	monocarboxylic acid biosynthetic process	BP
GO:0080108	S-alkylthiohydroximate lyase activity	MF
GO:0097305	response to alcohol	BP
GO:0099402	plant organ development	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901605	alpha-amino acid metabolic process	BP
GO:1901606	alpha-amino acid catabolic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP
GO:1901657	glycosyl compound metabolic process	BP
GO:1901659	glycosyl compound biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map00966	Glucosinolate biosynthesis	Glucosinolates are biologically active secondary metabolites found in Brassicaceae (mustard family) and related families.These compounds are genetically variable within plant species and used as natural pesticides, such as against insect herbivores. All glucosinolates share a common structure consisting of a beta-thioglucose moiety, a sulfonated oxime moiety, and a variable aglycone side chain derived from an alpha-amino acid. Genes encoding glucosinolate biosynthetic enzymes have been identified in Arabidopsis thaliana by genetic polymorphisms and loss-of-function mutations. This map shows examples of side chain elongation in methionine-derived glucosinolates and the core pathway for biosynthesis of glucosinolates from amino acids.
map00960	Tropane, piperidine and pyridine alkaloid biosynthesis	-
map00950	Isoquinoline alkaloid biosynthesis	Isoquinoline alkaloids are tyrosine-derived plant alkaloids with an isoquinoline skeleton. Among them benzylisoquinoline alkaloids form an important group with potent pharmacological activity, including analgesic compounds of morphine and codeine, and anti-infective agents of berberine, palmatine, and magnoflorine. Biosynthesis of isoquinoline alkaloids proceeds via decarboxylation of tyrosine or DOPA to yield dopamine, which together with 4-hydroxyphenylacetaldehyde, an aldehyde derived from tyrosine, is converted to reticuline, an important precursor of various benzylisoquinoline alkaloids.
map00400	Phenylalanine, tyrosine and tryptophan biosynthesis	-
map00380	Tryptophan metabolism	-
map00360	Phenylalanine metabolism	-
map00350	Tyrosine metabolism	-
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
map00130	Ubiquinone and other terpenoid-quinone biosynthesis	Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.