PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC105142480 View in Genome Browser
Position	NW_011500031.1:292370-313395 (+) 21025bp
Gene Type	gene
Gene Description (Protein Product)	"atrnl
Organism	Populus euphratica
Also AS	Potri.016G083100AT1G07910Potri.016G083100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Regulatory gene

gene-LOC105107546 Dof zinc finger protein

gene-LOC105107624 AP2-like ethylene-responsive transcription factor

gene-LOC105107883 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000278	mitotic cell cycle	BP
GO:0000281	mitotic cytokinesis	BP
GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	BP
GO:0000910	cytokinesis	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0003824	catalytic activity	MF
GO:0003972	RNA ligase (ATP) activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	BP
GO:0006396	RNA processing	BP
GO:0006399	tRNA metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007049	cell cycle	BP
GO:0007275	multicellular organism development	BP
GO:0008033	tRNA processing	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008356	asymmetric cell division	BP
GO:0008380	RNA splicing	BP
GO:0008452	RNA ligase activity	MF
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009966	regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010069	zygote asymmetric cytokinesis in embryo sac	BP
GO:0010070	zygote asymmetric cell division	BP
GO:0010154	fruit development	BP
GO:0010467	gene expression	BP
GO:0010646	regulation of cell communication	BP
GO:0010928	regulation of auxin mediated signaling pathway	BP
GO:0016070	RNA metabolic process	BP
GO:0016874	ligase activity	MF
GO:0016886	ligase activity, forming phosphoric ester bonds	MF
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0023051	regulation of signaling	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042245	RNA repair	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0048316	seed development	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051301	cell division	BP
GO:0061458	reproductive system development	BP
GO:0061640	cytoskeleton-dependent cytokinesis	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0140098	catalytic activity, acting on RNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1903047	mitotic cell cycle process	BP