Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_241.13803.g
View in Genome Browser
Position
scaffold241:1622351-1627856 (-)
5505bp
Gene Type
gene
Gene Description (Protein Product)
AMSH-like ubiquitin thioesterase
Organism
Populus pruinosa
Also AS Potri.010G141100AT4G16144Potri.010G141100.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_3528.18716.g AMSH-like ubiquitin thioesterase
Ppr_6732.28085.g Belongs to the SNF7 family
Ppr_674.28427.g Snf7
Regulatory gene
Ppr_11046.812.g Dof zinc finger protein
Ppr_11896.1284.g ZINC FINGER protein
Ppr_11896.1292.g Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006897 endocytosis BP
GO:0006996 organelle organization BP
GO:0007033 vacuole organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009987 cellular process BP
GO:0010638 positive regulation of organelle organization BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016579 protein deubiquitination BP
GO:0019538 protein metabolic process BP
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032386 regulation of intracellular transport BP
GO:0032388 positive regulation of intracellular transport BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0033043 regulation of organelle organization BP
GO:0033157 regulation of intracellular protein transport BP
GO:0036211 protein modification process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043412 macromolecule modification BP
GO:0044088 regulation of vacuole organization BP
GO:0044090 positive regulation of vacuole organization BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046907 intracellular transport BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051179 localization BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060341 regulation of cellular localization BP
GO:0065007 biological regulation BP
GO:0070201 regulation of establishment of protein localization BP
GO:0070536 protein K63-linked deubiquitination BP
GO:0070646 protein modification by small protein removal BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071108 protein K48-linked deubiquitination BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090087 regulation of peptide transport BP
GO:0090316 positive regulation of intracellular protein transport BP
GO:0097708 intracellular vesicle CC
GO:0098657 import into cell BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1903827 regulation of protein localization BP
GO:1903829 positive regulation of protein localization BP
GO:1904951 positive regulation of establishment of protein localization BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.