Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_39747.19828.g
View in Genome Browser
Position
scaffold39747:33998-35308 (-)
1310bp
Gene Type
gene
Gene Description (Protein Product)
26S proteasome non-ATPase regulatory subunit
Organism
Populus pruinosa
Also AS Potri.006G277900AT1G29150Potri.006G277900.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_5776.25105.g Belongs to the AAA ATPase family
Ppr_422.20295.g Belongs to the AAA ATPase family
Ppr_674.28363.g 26S proteasome non-atpase regulatory subunit
Regulatory gene
Ppr_1043.351.g Transcription factor JUNGBRUNNEN 1-like
Ppr_1043.353.g NAC domain-containing protein 21
Ppr_1043.403.g NAC domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000502 proteasome complex CC
GO:0003674 molecular_function MF
GO:0005198 structural molecule activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005838 proteasome regulatory particle CC
GO:0005911 cell-cell junction CC
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008541 proteasome regulatory particle, lid subcomplex CC
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009506 plasmodesma CC
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0016043 cellular component organization BP
GO:0019538 protein metabolic process BP
GO:0019941 modification-dependent protein catabolic process BP
GO:0022607 cellular component assembly BP
GO:0022624 proteasome accessory complex CC
GO:0030054 cell junction CC
GO:0030154 cell differentiation BP
GO:0030163 protein catabolic process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0034622 protein-containing complex assembly BP
GO:0042221 response to chemical BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043248 proteasome assembly BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046686 response to cadmium ion BP
GO:0048863 stem cell differentiation BP
GO:0048869 cellular developmental process BP
GO:0050896 response to stimulus BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0055044 symplast CC
GO:0065003 protein-containing complex assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1902494 catalytic complex CC
GO:1905368 peptidase complex CC
GO:1905369 endopeptidase complex CC
KEGG Term Name Description
map03050 Proteasome The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.