Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_4570.22257.g
View in Genome Browser
Position
scaffold4570:353983-358069 (+)
4086bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the syntaxin family
Organism
Populus pruinosa
Also AS Potri.018G072400AT3G24350Potri.018G072400.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_97.34980.g Belongs to the synaptobrevin family
Ppr_572.24585.g Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor
Ppr_900.33784.g Belongs to the syntaxin family
Regulatory gene
Ppr_10661.565.g Truncated transcription factor CAULIFLOWER
Ppr_11046.812.g Dof zinc finger protein
Ppr_1145.947.g Myb-like DNA-binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0000149 SNARE binding MF
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0006810 transport BP
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport BP
GO:0006906 vesicle fusion BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0022406 membrane docking BP
GO:0031090 organelle membrane CC
GO:0031201 SNARE complex CC
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031984 organelle subcompartment CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048278 vesicle docking BP
GO:0048284 organelle fusion BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0061024 membrane organization BP
GO:0061025 membrane fusion BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090174 organelle membrane fusion BP
GO:0098588 bounding membrane of organelle CC
GO:0098791 Golgi apparatus subcompartment CC
GO:0098796 membrane protein complex CC
GO:0140056 organelle localization by membrane tethering BP
KEGG Term Name Description
map04130 SNARE interactions in vesicular transport -