PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Ppr_47942.22483.g View in Genome Browser
Position	scaffold47942:450416-451282 (+) 866bp
Gene Type	gene
Gene Description (Protein Product)	The H protein shuttles the methylamine group of glycine from the P protein to the T protein
Organism	Populus pruinosa
Also AS	Potri.012G123700AT2G35120Potri.012G123700.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Ppr_966.34802.g Serine--glyoxylate Ppr_6261.26127.g The glycine cleavage system catalyzes the degradation of glycine Ppr_779.31796.g Dihydrolipoyl dehydrogenase
Regulatory gene	Ppr_10661.565.g Truncated transcription factor CAULIFLOWER Ppr_11046.812.g Dof zinc finger protein Ppr_11896.1284.g ZINC FINGER protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00630	Glyoxylate and dicarboxylate metabolism	-
map00260	Glycine, serine and threonine metabolism	Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].