PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Ppr_4821.22718.g View in Genome Browser
Position	scaffold4821:109899-116191 (+) 6292bp
Gene Type	gene
Gene Description (Protein Product)	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Organism	Populus pruinosa
Also AS	Potri.018G145800AT1G30330Potri.018G145800.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Ppr_754.30747.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations Ppr_668.27360.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations Ppr_779.32356.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Regulatory gene	Ppr_22.13057.g Protein BASIC PENTACYSTEINE6-like Ppr_224.12056.g GAGA binding protein-like family Ppr_224.12058.g GAGA binding protein-like family
Target gene	Ppr_1.10528.g Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis Ppr_1.10547.g Pentatricopeptide repeat-containing protein Ppr_1.10548.g protease

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0009314	response to radiation	BP
GO:0009416	response to light stimulus	BP
GO:0009605	response to external stimulus	BP
GO:0009606	tropism	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009629	response to gravity	BP
GO:0009630	gravitropism	BP
GO:0009637	response to blue light	BP
GO:0009638	phototropism	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009723	response to ethylene	BP
GO:0009725	response to hormone	BP
GO:0009733	response to auxin	BP
GO:0009785	blue light signaling pathway	BP
GO:0009791	post-embryonic development	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010015	root morphogenesis	BP
GO:0010033	response to organic substance	BP
GO:0010101	post-embryonic root morphogenesis	BP
GO:0010102	lateral root morphogenesis	BP
GO:0010311	lateral root formation	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0022622	root system development	BP
GO:0023052	signaling	BP
GO:0030522	intracellular receptor signaling pathway	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0042221	response to chemical	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0048364	root development	BP
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048527	lateral root development	BP
GO:0048528	post-embryonic root development	BP
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0071214	cellular response to abiotic stimulus	BP
GO:0071478	cellular response to radiation	BP
GO:0071482	cellular response to light stimulus	BP
GO:0071483	cellular response to blue light	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090696	post-embryonic plant organ development	BP
GO:0090697	post-embryonic plant organ morphogenesis	BP
GO:0090698	post-embryonic plant morphogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:0099402	plant organ development	BP
GO:0104004	cellular response to environmental stimulus	BP
GO:0140110	transcription regulator activity	MF
GO:1901363	heterocyclic compound binding	MF
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1905392	plant organ morphogenesis	BP
GO:1905393	plant organ formation	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04075	Plant hormone signal transduction	-