Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_572.24553.g
View in Genome Browser
Position
scaffold572:2739901-2742178 (-)
2277bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the synaptobrevin family
Organism
Populus pruinosa
Also AS Potri.001G050400AT1G04760Potri.001G050400.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_706.29710.g Belongs to the STXBP unc-18 SEC1 family
Ppr_799.32825.g Belongs to the STXBP unc-18 SEC1 family
Ppr_706.29513.g Belongs to the syntaxin family
Regulatory gene
Ppr_22.13057.g Protein BASIC PENTACYSTEINE6-like
Ppr_224.12056.g GAGA binding protein-like family
Ppr_224.12058.g GAGA binding protein-like family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000149 SNARE binding MF
GO:0003674 molecular_function MF
GO:0005484 SNAP receptor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006906 vesicle fusion BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0031201 SNARE complex CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032940 secretion by cell BP
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046903 secretion BP
GO:0048284 organelle fusion BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0061024 membrane organization BP
GO:0061025 membrane fusion BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0090174 organelle membrane fusion BP
GO:0097708 intracellular vesicle CC
GO:0098796 membrane protein complex CC