Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ppr_58.25299.g
View in Genome Browser
Position
scaffold58:1724047-1727286 (-)
3239bp
Gene Type
gene
Gene Description (Protein Product)
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Organism
Populus pruinosa
Also AS Potri.002G172800AT3G61830Potri.002G172800.v4.1

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_754.30749.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Ppr_771.31286.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Ppr_779.32358.g Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Regulatory gene
Ppr_22.13057.g Protein BASIC PENTACYSTEINE6-like
Ppr_224.12056.g GAGA binding protein-like family
Ppr_224.12058.g GAGA binding protein-like family
Target gene
Ppr_1.10528.g Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis
Ppr_1.10547.g Pentatricopeptide repeat-containing protein
Ppr_1.10548.g protease

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005911 cell-cell junction CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0008150 biological_process BP
GO:0009506 plasmodesma CC
GO:0009889 regulation of biosynthetic process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0030054 cell junction CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0055044 symplast CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0080090 regulation of primary metabolic process BP
GO:0140110 transcription regulator activity MF
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map04075 Plant hormone signal transduction -