Basic Information
Gene ID
Ppr_630.26218.g
Position
scaffold630:239952-248730 (-)
8778bp
Gene Type
gene
Gene Description (Protein Product)
U3 small nucleolar ribonucleoprotein protein
Organism
Also AS Potri.015G078500AT5G66540Potri.015G078500.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ppr_6607.26856.g rRNA-processing protein fcf2-like
Ppr_706.29800.g Ribosomal protein S1-like RNA-binding domain
Ppr_7203.30084.g Ribosomal protein S1-like RNA-binding domain
Regulatory gene
Ppr_10661.565.g Truncated transcription factor CAULIFLOWER
Ppr_11046.812.g Dof zinc finger protein
Ppr_1145.947.g Myb-like DNA-binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.